Seung Lab Wiki

PLEASE KLICK HERE TO GO TO THE OLD WIKI

World Domination through accumulation of shared knowledge.
Please AddToThisWiki!

Please help copy old documentation from over to the new system!
What is a wiki?
Some documentation on [TWiki.WelcomeGuest using our wiki].

Lab Calendar
Add lab meetings and other events here.

ENJC][Experimental Neuroscience Journal Club, list of speakers, dates, and papers.

Project Pages

A zone for project specific common knowledge.

• EMReconstructionProject][EM Reconstruction - a common repository. Please contribute.
• ExperimentalHowTo][Experimental Physiology tools - hardware usage notes. In-house instructions and procedures.
• Omni - 3d viewer
• [/seunglab/cnpkg CNPKG] - convolutional neural network package based of CNS GPU module.
• Gene Expression Quantization - Collaboration with CSHL, Tissue Vision

Code repository

   * [[ImageProcessing][Image Processing]] - please contribute your image processing routines.
   * [[ControlTools][Control Tools]] - please contribute you equipment control scripts here.
   * [[http://hebb.mit.edu/NMF][NMF excerpts]] - from [[http://journalclub.mit.edu][journalclub]] discussion forum. 

Computer Network Documentation

   * [[CurrentState][The State of the Network]] - most up-to-date situation.
   * [[Brainiac][Brainiac]] - About our new Linux compute cluster.
   * [[NewNetwork][Migrating to a new Network]] - procedures, no longer relevant. 
   * [[ComputerSystemUpdates][Computer System Updates]] - transitional period of 2005-2006, no longer relevant.
   * [[AlansNotes][The Book of Alan]] - our Computer System BC (read "Before Crash")
   * [[http://hebb.mit.edu/lab][The Book of Ben]] - "Old Internal lab pages" before Wiki.

HOWTO-s

This section has useful how to and reference information

New network docs for _gliamac_

   * [[gliamac clients][Client setup help]] - For ubuntu, Windows, OS X
   * [[gliamac print][Printing on gliamac]]
   * [[gliamac client list][Current client list]] - For admin purposes
 

EHS Notes

   * [[Autoclaves][Autoclaves]]
   * [[Biosafety Cabinets][Biosafety Cabinets]] (aka hoods)
   * [[%ATTACHURL%/MITChemHygMH1FinalDoc2.pdf][MIT Chemical Hygiene Plan for BCS]]: If you work in 5077 or 5078, this is required reading.
   * [[EHS meeting notes May 22, 2006][EHS meeting notes May 22, 2006]]
   * Gas delivery problems? Contact John Jordan @ Airgas: 617-253-4761, ext. 2. Airgas direct: 866-718-0685
   * Lab Specific Chemical Hygiene Presentation: [[%ATTACHURL%/labspecificchemhygiene.ppt][lab specific chem hygiene presentation]]

Lab inventory tools

Borrowed equipment
Fridge contents

Things to do

Stuff that needs doing around the lab. Communal lab chores that need volunteers! Please pick one off this list when bored...

Miscellaneous

   * [[bbq-photos][Photos from the barbecue 7.16.06]]
   * HalloweenPhotos2006 - a couple of people did wear costumes