The Seung Lab

The project has the following modules

- Microscope image tile creation
- Image Stitching
- Image Alignment
- Image warping & Segmentation
- Cell counting

The image stitching and Image Alignment can be done in Fiji. The macros can be run from command line as given in
http://rsbweb.nih.gov/ij/developer/macro/macros.html#cli